| Eco47III
| AGCGCT
| 6
| blunt
| 1
| 961 |
| EcoRV
| GATATC
| 6
| blunt
| 1
| 3748 |
| NruI
| TCGCGA
| 6
| blunt
| 1
| 3258 |
| PsiI
| TTATAA
| 6
| blunt
| 1
| 629 |
| SmaI
| CCCGGG
| 6
| blunt
| 1
| 2918 |
| SnaBI
| TACGTA
| 6
| blunt
| 1
| 2824 |
| StuI
| AGGCCT
| 6
| blunt
| 1
| 759 |
| AflII
| CTTAAG
| 6
| five_prime
| 1
| 1344 |
| BglII
| AGATCT
| 6
| five_prime
| 1
| 13 |
| Bpu10I
| CCTNAGC
| 6
| five_prime
| 1
| 8396 |
| Bsp1407I
| TGTACA
| 6
| five_prime
| 1
| 4619 |
| ClaI
| ATCGAT
| 6
| five_prime
| 1
| 3503 |
| Eco31I
| GGTCTC
| 6
| five_prime
| 1
| 6622 |
| EcoNI
| CCTNNNNNAGG
| 6
| five_prime
| 1
| 5168 |
| EcoRI
| GAATTC
| 6
| five_prime
| 1
| 1 |
| MfeI
| CAATTG
| 6
| five_prime
| 1
| 596 |
| NarI
| GGCGCC
| 6
| five_prime
| 1
| 1961 |
| NcoI
| CCATGG
| 6
| five_prime
| 1
| 2309 |
| NdeI
| CATATG
| 6
| five_prime
| 1
| 7732 |
| NotI
| GCGGCCGC
| 8
| five_prime
| 1
| 20 |
| PpuMI
| RGGWCCY
| 7
| five_prime
| 1
| 4991 |
| XbaI
| TCTAGA
| 6
| five_prime
| 1
| 40 |
| XhoI
| CTCGAG
| 6
| five_prime
| 1
| 28 |
| AatII
| GACGTC
| 6
| three_prime
| 1
| 7483 |
| BstXI
| CCANNNNNNTGG
| 6
| three_prime
| 1
| 2950 |
| Eam1105I
| GACNNNNNGTC
| 6
| three_prime
| 1
| 6561 |
| KpnI
| GGTACC
| 6
| three_prime
| 1
| 38 |
| SacI
| GAGCTC
| 6
| three_prime
| 1
| 2636 |
| SphI
| GCATGC
| 6
| three_prime
| 1
| 8522 |
| Sse8387I
| CCTGCAGG
| 8
| three_prime
| 1
| 8528 |
| BsaBI
| GATNNNNATC
| 6
| blunt
| 2
| 508, 3378 |
| HpaI
| GTTAAC
| 6
| blunt
| 2
| 9, 609 |
| OliI
| CACNNNNGTG
| 6
| blunt
| 2
| 3363, 3718 |
| PvuII
| CAGCTG
| 6
| blunt
| 2
| 1912, 8748 |
| AclI
| AACGTT
| 6
| five_prime
| 2
| 6787, 7160 |
| AsuII
| TTCGAA
| 6
| five_prime
| 2
| 4280, 8026 |
| BamHI
| GGATCC
| 6
| five_prime
| 2
| 745, 8506 |
| BclI
| TGATCA
| 6
| five_prime
| 2
| 866, 1516 |
| BsePI
| GCGCGC
| 6
| five_prime
| 2
| 4417, 7887 |
| BseYI
| CCCAGC
| 6
| five_prime
| 2
| 2689, 5972 |
| BspLU11I
| ACATGT
| 6
| five_prime
| 2
| 1330, 3262 |
| DraII
| RGGNCCY
| 6
| five_prime
| 2
| 4991, 7537 |
| SalI
| GTCGAC
| 6
| five_prime
| 2
| 2701, 3560 |
| SexAI
| ACCWGGT
| 7
| five_prime
| 2
| 908, 2999 |
| AlwNI
| CAGNNNCTG
| 6
| three_prime
| 2
| 2562, 6084 |
| ApaI
| GGGCCC
| 6
| three_prime
| 2
| 4116, 8196 |
| BglI
| GCCNNNNNGGC
| 6
| three_prime
| 2
| 2476, 6681 |
| DrdI
| GACNNNNNNGTC
| 6
| three_prime
| 2
| 5776, 7645 |
| FalI
| AAGNNNNNCTT
| 6
| three_prime
| 2
| 3063, 3095 |
| PstI
| CTGCAG
| 6
| three_prime
| 2
| 8528, 8771 |
| PvuI
| CGATCG
| 6
| three_prime
| 2
| 2155, 6931 |
| XcmI
| CCANNNNNNNNNTGG
| 6
| three_prime
| 2
| 2523, 2947 |
| BtrI
| CACGTC
| 6
| blunt
| 3
| 3939, 5617, 8711 |
| PmaCI
| CACGTG
| 6
| blunt
| 3
| 3980, 5288, 5576 |
| AarI
| CACCTGC
| 7
| five_prime
| 3
| 4344, 5161, 7960 |
| AflIII
| ACRYGT
| 6
| five_prime
| 3
| 1330, 3262, 8708 |
| Cfr10I
| RCCGGY
| 6
| five_prime
| 3
| 1957, 3801, 6641 |
| HindIII
| AAGCTT
| 6
| five_prime
| 3
| 5451, 8488, 8512 |
| BciVI
| GTATCC
| 6
| three_prime
| 3
| 1635, 5871, 7398 |
| DraIII
| CACNNNGTG
| 6
| three_prime
| 3
| 1138, 3980, 5579 |
| PflMI
| CCANNNNNTGG
| 6
| three_prime
| 3
| 198, 2211, 2310 |
| XmnI
| GAANNNNTTC
| 6
| blunt
| 4
| 3504, 4902, 4952, 7160 |
| AcyI
| GRCGYC
| 6
| five_prime
| 4
| 1961, 2216, 7098, 7480 |
| ApaLI
| GTGCAC
| 6
| five_prime
| 4
| 5422, 5982, 7228, 7725 |
| AvaI
| CYCGRG
| 6
| five_prime
| 4
| 28, 2916, 3846, 5706 |
| BspHI
| TCATGA
| 6
| five_prime
| 4
| 1513, 6388, 7396, 7501 |
| BspMI
| ACCTGC
| 6
| five_prime
| 4
| 4344, 5161, 7960, 8517 |
| BplI
| GAGNNNNNCTC
| 6
| three_prime
| 4
| 22, 54, 2503, 2535 |
| BseRI
| GAGGAG
| 6
| three_prime
| 4
| 304, 1144, 3053, 3759 |
| BsrDI
| GCAATG
| 6
| three_prime
| 4
| 1253, 1706, 6622, 6796 |
| MmeI
| TCCRAC
| 6
| three_prime
| 4
| 216, 5883, 6067, 8511 |
| TaqII
| GACCGA
| 6
| three_prime
| 4
| 6909, 6935, 7068, 7094 |
| BalI
| TGGCCA
| 6
| blunt
| 5
| 2204, 2939, 3724, 4060, 8248 |
| PfoI
| TCCNGGA
| 6
| five_prime
| 5
| 2182, 2372, 4004, 5547, 7594 |
| BfiI
| ACTGGG
| 6
| three_prime
| 5
| 1788, 2782, 3980, 5577, 6601 |
| Eco57I
| CTGAAG
| 6
| three_prime
| 5
| 343, 1054, 2584, 6216, 7228 |
| GsuI
| CTGGAG
| 6
| three_prime
| 5
| 2984, 4027, 5288, 5531, 6631 |
| NspI
| RCATGY
| 6
| three_prime
| 5
| 1334, 3266, 7589, 8404, 8522 |
| ScaI
| AGTACT
| 6
| blunt
| 6
| 7041, 8537, 8556, 8575, 8594, 8613 |
| Esp3I
| CGTCTC
| 6
| five_prime
| 6
| 1004, 4003, 4592, 5549, 7551, 7593 |
| FauI
| CCCGC
| 5
| five_prime
| 6
| 2362, 3665, 4491, 7655, 7665, 7815 |
| Ksp632I
| CTCTTC
| 6
| five_prime
| 6
| 321, 3405, 4430, 7356, 7875, 8866 |
| BsmI
| GAATGC
| 6
| three_prime
| 6
| 233, 597, 690, 1534, 2142, 2464 |
| BtsI
| GCAGTG
| 6
| three_prime
| 6
| 225, 447, 685, 5184, 6961, 6981 |
| BsaAI
| YACGTR
| 6
| blunt
| 7
| 2824, 3980, 4050, 5288, 5357, 5506, 5576 |
| HindII
| GTYRAC
| 6
| blunt
| 7
| 9, 609, 1918, 2703, 3562, 3734, 7102 |
| SspI
| AATATT
| 6
| blunt
| 7
| 477, 3280, 4611, 4686, 5335, 7365, 8431 |
| VspI
| ATTAAT
| 6
| five_prime
| 7
| 1273, 3282, 3476, 4901, 5294, 6733, 8433 |
| BsgI
| GTGCAG
| 6
| three_prime
| 7
| 430, 825, 3670, 3945, 5195, 5221, 5613 |
| HaeII
| RGCGCY
| 6
| three_prime
| 7
| 963, 1964, 3709, 3787, 5916, 8645, 8665 |
| TspGWI
| ACGGA
| 5
| three_prime
| 7
| 3400, 3886, 5672, 7001, 7343, 8395, 8688 |
| AccI
| GTMKAC
| 6
| five_prime
| 8
| 2702, 3561, 3863, 4297, 5440, 5691, 8009, 8670 |
| AvaII
| GGWCC
| 5
| five_prime
| 8
| 2037, 3022, 3796, 4991, 5469, 6699, 6921, 8276 |
| StyI
| CCWWGG
| 6
| five_prime
| 8
| 346, 891, 2219, 2309, 4520, 5230, 5242, 7784 |
| BcgI
| CGANNNNNNTGC
| 6
| three_prime
| 8
| 2879, 2913, 4133, 4167, 7066, 7100, 8143, 8177 |
| MslI
| CAYNNNNRTG
| 6
| blunt
| 9
| 2413, 3363, 3718, 4811, 5199, 6813, 6972, 7331, 8405 |
| SmlI
| CTYRAG
| 6
| five_prime
| 9
| 28, 1344, 1979, 3050, 4959, 5774, 6036, 6313, 7181 |
| TfiI
| GAWTC
| 5
| five_prime
| 9
| 164, 188, 3177, 3500, 3505, 4549, 5191, 7756, 8791 |
| BsrBI
| CCGCTC
| 6
| blunt
| 10
| 1727, 1824, 4486, 7402, 7822, 8550, 8569, 8588, 8607, 8626 |
| PleI
| GAGTC
| 5
| five_prime
| 10
| 291, 388, 1802, 2524, 2869, 5147, 6047, 6550, 8366, 8625 |
| TatI
| WGTACW
| 6
| five_prime
| 10
| 1327, 4619, 5061, 7039, 7715, 8535, 8554, 8573, 8592, 8611 |
| Eco57MI
| CTGRAG
| 6
| three_prime
| 10
| 343, 1054, 2584, 2984, 4027, 5288, 5531, 6216, 6631, 7228 |
| PpiI
| GAACNNNNNCTC
| 7
| three_prime
| 10
| 3048, 3080, 3835, 3867, 5694, 5726, 6351, 6383, 7193, 7225 |
| BseMII
| CTCAG
| 5
| three_prime
| 11
| 271, 2072, 2400, 3539, 5957, 6366, 6532, 7049, 7710, 8335, 8353 |
| ApoI
| RAATTY
| 6
| five_prime
| 12
| 1, 132, 660, 877, 2947, 3147, 3242, 4948, 5213, 5325, 5382, 5429 |
| CfrI
| YGGCCR
| 6
| five_prime
| 12
| 20, 1825, 2093, 2202, 2282, 2657, 2835, 2937, 3722, 4058, 6949, 8246 |
| XhoII
| RGATCY
| 6
| five_prime
| 12
| 13, 46, 745, 1696, 2645, 6309, 6320, 6406, 6418, 7186, 7203, 8506 |
| BseSI
| GKGCMC
| 6
| three_prime
| 12
| 2420, 2686, 2788, 2847, 3985, 4116, 5426, 5575, 5986, 7232, 7729, 8196 |
| BsmAI
| GTCTC
| 5
| five_prime
| 13
| 1004, 4003, 4480, 4592, 5549, 6622, 7398, 7551, 7593, 7824, 8284, 8362, 8623 |
| Tsp45I
| GTSAC
| 5
| five_prime
| 13
| 77, 1095, 1449, 1715, 3574, 3711, 4712, 4754, 5004, 5307, 6817, 7028, 7604 |
| EciI
| GGCGGA
| 6
| three_prime
| 13
| 1054, 1788, 2459, 2480, 2828, 3788, 3949, 4014, 5544, 5609, 5730, 5876, 6704 |
| HgaI
| GACGC
| 5
| five_prime
| 14
| 1003, 1044, 2224, 2446, 2538, 4020, 4127, 4933, 5531, 5779, 6357, 7087, 7645, 8176 |
| Hpy99I
| CGWCG
| 5
| three_prime
| 15
| 2554, 2704, 3972, 4121, 4518, 4927, 5468, 5589, 5773, 6567, 6830, 7795, 8192, 8285, 8715 |
| BccI
| CCATC
| 5
| five_prime
| 16
| 278, 1129, 1305, 1896, 2094, 2187, 2649, 3308, 3330, 3399, 3774, 4188, 6605, 6729, 7016, 8119 |
| EcoRII
| CCWGG
| 5
| five_prime
| 16
| 908, 1749, 1853, 1964, 2233, 2284, 2303, 2372, 2555, 2999, 3035, 3701, 4004, 5547, 5815, 5828 |
| BsaXI
| ACNNNNNCTCC
| 6
| three_prime
| 16
| 207, 237, 2846, 2876, 2918, 2948, 2966, 2996, 4472, 4502, 4516, 4546, 7765, 7795, 7809, 7839 |
| FokI
| GGATG
| 5
| five_prime
| 17
| 1914, 2152, 2166, 2199, 2269, 2331, 2581, 3988, 4271, 4745, 5564, 6527, 6708, 6995, 7638, 8033, 8280 |
| SfaNI
| GCATC
| 5
| five_prime
| 18
| 662, 1317, 1591, 2174, 2177, 2216, 2309, 3279, 4773, 4795, 5137, 5765, 6817, 7008, 7257, 7616, 7710, 8505 |
| HphI
| GGTGA
| 5
| three_prime
| 20
| 1210, 1727, 1837, 2000, 2379, 2439, 3106, 3513, 4427, 4494, 5219, 6404, 6631, 7047, 7253, 7288, 7572, 7581, 7815, 7882 |
| TauI
| GCSGC
| 5
| three_prime
| 20
| 22, 25, 1011, 1397, 1730, 1827, 1909, 2069, 2160, 2496, 3833, 4030, 4041, 5518, 5529, 5870, 6954, 7076, 7305, 7701 |
| TspDTI
| ATGAA
| 5
| three_prime
| 20
| 223, 604, 1527, 2596, 2995, 3236, 3290, 3390, 3513, 4417, 4569, 4963, 4999, 5328, 5476, 6452, 6529, 6832, 7893, 8274 |
| TspRI
| CASTG
| 5
| three_prime
| 21
| 225, 454, 692, 849, 2795, 2967, 3112, 3632, 3638, 4769, 4893, 5075, 5191, 5431, 6076, 6089, 6360, 6509, 6614, 6961, 6988 |
| Hin4I
| GAYNNNNNVTC
| 6
| three_prime
| 22
| 488, 520, 912, 944, 1688, 1720, 2592, 2624, 2841, 2846, 2873, 2878, 3639, 3671, 4516, 4548, 6547, 6579, 6621, 6653, 7765, 7797 |
| MboII
| GAAGA
| 5
| three_prime
| 22
| 273, 338, 351, 2577, 2609, 3281, 3386, 3392, 3630, 3684, 3828, 4304, 4417, 5729, 6330, 6401, 7156, 7234, 7343, 7892, 8005, 8883 |
| SduI
| GDGCHC
| 6
| three_prime
| 22
| 1483, 1898, 2420, 2516, 2636, 2686, 2788, 2847, 3051, 3853, 3985, 4088, 4116, 5426, 5575, 5707, 5986, 7147, 7232, 7729, 8196, 8224 |
| BsrI
| ACTGG
| 5
| three_prime
| 24
| 849, 1794, 2531, 2788, 2967, 3105, 3535, 3638, 3859, 3986, 4762, 4893, 5075, 5305, 5572, 5699, 6076, 6089, 6201, 6607, 6725, 6768, 7037, 7207 |
| BbvI
| GCAGC
| 5
| five_prime
| 25
| 431, 634, 998, 1298, 1727, 1921, 2355, 2980, 3518, 3671, 3946, 4896, 4899, 5188, 5222, 5331, 5606, 5997, 6087, 6090, 6296, 6599, 6990, 7601, 8757 |
| TseI
| GCWGC
| 5
| five_prime
| 25
| 444, 622, 1011, 1286, 1740, 1909, 2343, 2968, 3531, 3684, 3959, 4909, 4912, 5176, 5235, 5319, 5594, 6010, 6075, 6078, 6284, 6612, 6978, 7589, 8745 |